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Publications and Impact

List of Publications

Journal Publications

2021

  • An alternative approach to nucleic acid memory
    George D. Dickinson, Golam Md Mortuza, William Clay, Luca Piantanida, Christopher M. Green, Chad Watson, Eric J. Hayden, Tim Andersen, Wan Kuang, Elton Graugnard, Reza Zadegan & William L. Hughes, Nature Communications, 12:2371, (2021). doi.org/10.1038/s41467-021-22277-y.

  • A PCR-free approach to random access in DNA
    Luca Piantanida, & William L. Hughes, Nature Materials, 1172:1178, (2021). doi.org/10.1038/s41563-021-01089-x

  • Correlative Super-Resolution and AtomicForce Microscopy of DNA Nanostructures and Characterization of Addressable Site Defects
    Christopher M. Green, William L. Hughes, Elton Graugnard, and Wan Kuang, ACS Nano, 15, 11597:11606, (2021). doi.org/10.1021/acsnano.1c01976

2017

  • Metrology of DNA arrays by super-resolution microscopy
    Christopher M. Green, Kelly Schutt, Noah Morris, Reza M. Zadegan,
    William L. Hughes, Wan Kuang and Elton Graugnard, Nanoscale, 9, 10205, (2017). doi.org/10.1039/c7nr00928c.

  • CAGE: Chromatin Analogous Gene Expression
    Reza M. Zadegan and William L. Hughes, ACS Synthetic Biology, 6, 1800:1806, (2017). doi.org/10.1021/acssynbio.7b00045.

2016

  • Nucleic acid memory
    Victor Zhirnov, Reza M. Zadegan, Gurtej S. Sandhu, George M. Church and William L. Hughes, Nature Materials, 15, (2016). doi.org/10.1038/nmat4594.

Conference Publications

  • A Coding Scheme for Nucleic Acid Memory (NAM)
    Kelsey Suyehira, Simon Llewellyn, William Clay, Reza Zadegan, William L. Hughes and Tim Andersen, 2017 IEEE WORKSHOP ON MICROELECTRONICS AND ELECTRON DEVICES (WMED), 2017, pp. 1-3, doi: 10.1109/WMED.2017.7916922.

Conference Presentations

Talk contributions

  • Luca Piantanida, NanoInBio 2022 Nucleic Acid Memory:
    Super Resolution Microscopy enhances novel approach to DNA data storage, Le Gosier-Guadeloupe.
  • Luca Piantanida (invited), ASU Center of Molecular Design & Biomimetics Annual Symposium 2021, Digital Nucleic Acid Memory. Online event.
  • Christopher M. Green,  FNANO 2021, Correlative DNA-PAINT/AFM Microscopy of DNA Nanostructures and Characterization of Addressable Sites, Online event.
  • George D. Dickinson, FNANO 2021, Digital Nucleic AcidMemory: A New Approach to DNA-based Data Storage. Online event.

Poster contributions

  • Luca Piantanida, DNA28 (2022),Nucleic Acid Memory: Super Resolution Microscopy enhances novel approach to DNA data storage. Albuquerque, NM.
  • Sarah Kobernat, DNA28 (2022), Digital Nucleic Acid Memory 2.0: Advances in storage capacity and ease-of-use. Albuquerque, NM.
  • Luca Piantanida, FNANO 2022, A DNA-PAINT approach for Nucleic Acid Memory. Online event.
  • Michael Tobiason, FNANO 2019, Engineering Kinetically Reproducible DNA Devices. Snowbird, UT.
  • Michael Tobiason, DNA25 (2019), Engineering Kinetically Uniform Sets of DNA sequences. Seattle, WA.

Dissertations/Theses

  • Structure Aware Smart Encoding and Decoding of Information in DNA
    Llewellyn, Shoshana,  (2022). Boise State University Theses and Dissertations (2713657901).

  • In Silico Sequence Optimization for the Reproducible Generation of DNA Structures
    Tobiason Michael D.,  (2019). Boise State University Theses and Dissertations. 1614. doi.10.18122/td/1614/boisestate

  • Nanoscale Optical and Correlative Microscopies for Quantitative Characterization of DNA NanostructuresGreen Christopher M., (2019). Boise State University Theses and Dissertations. 1639 doi.10.18122/td/1639/boisestate

  • The Development of Nucleic Acid Biosensors with Allosteric Fluorescence Signals
    Burden Steven J., (2019). Boise State University Theses and Dissertations. 1627 doi.10.18122/td/1627/boisestate

  • Using DNA For Data Storage: Encoding and Decoding Algorithm Development
    Suyehira Kelsey,  (2018). Boise State University Theses and Dissertations. 1500 doi.10.18122/td/1500/boisestate

Patents

  • William L. Hughes, Elton Graugnard, Wan Kuang, Tim Andersen, Eric J. Hayden, Reza Zadegan, George D. Dickinson, Luca Piantanida, William Clay, Christopher M. Green, Golam Md Mortuza, US Patent, 17/443312, “NUCLEIC ACID MEMORY (NAM) / DIGITAL NUCLEIC ACID MEMORY (DNAM)”, 2021, US 20220025428 A1.

Undergraduate programs contributions

  • Amanda Wolf,  Idaho Conference on Undergraduate Research (2022), The efficiency of Pooled vs. Unpooled Staple Strands for Folding DNA Nanostructures. Online event.
  • Benjamin Balzer,  Idaho Conference on Undergraduate Research (2022), Custom DNA origami Scaffolds for Digital Nucleic Acid Memory. Online event.
  • Amanda Wolf,  Idaho Conference on Undergraduate Research (2021), DNA origami FRET Ruler for Nucleic Acid Memory. Online event.
  • Benjamin Balzer,  Idaho Conference on Undergraduate Research (2021), Enhancement of Digital Nucleic Acid Memory by Customizing DNA Origami Scaffolds. Online event.

Outreach